Constants¶
Constants of DiffuPath.
- diffupath.constants.DEFAULT_DIFFUPATH_DIR = '/home/docs/.diffupath'¶
Default DiffuPath directory
- diffupath.constants.OUTPUT_DIFFUPATH_DIR = '/home/docs/.diffupath/output'¶
Default DiffuPath output directory
- diffupath.constants.BY_METHOD = 'method'¶
raw
- diffupath.constants.KEGG_NAME = 'kegg'¶
KEGG
- diffupath.constants.REACTOME_NAME = 'reactome'¶
Reactome
- diffupath.constants.WIKIPATHWAYS_NAME = 'wikipathways'¶
WikiPathways
- diffupath.constants.MIRTARBASE_NAME = 'mirtarbase'¶
MirTarBase
- diffupath.constants.SIDER_NAME = 'sider'¶
SIDER
- diffupath.constants.PHEWAS_NAME = 'phewascatalog'¶
PhewasCatalog
- diffupath.constants.HSDN_NAME = 'hsdn'¶
HSDN
- diffupath.constants.DDR_NAME = 'ddr'¶
DDR
- diffupath.constants.DRUGBANK_NAME = 'drugbank'¶
DrugBank
- diffupath.constants.GENE_ONTOLOGY_NAME = 'go'¶
Gene Ontology
- diffupath.constants.DATABASES = ['kegg', 'reactome', 'wikipathways', 'mirtarbase', 'sider', 'phewascatalog', 'hsdn', 'ddr', 'drugbank', 'go']¶
Databases available for download in DiffuPath